Skip to main content
LakeQuality
F

Pepin Lake

Pepin County, MinnesotaLimited DataEutrophic

On the LakeGrade rubric Pepin Lake fails the cutoffs — a TSI of 61 and persistent algal pressure put it in the bottom tier. Clarity, phosphorus, and chlorophyll-a all rate similarly, so there is no obvious single lever to pull on watershed management.

At a TSI of 61, Pepin Lake reads as eutrophic — nutrient-rich enough that summer algal growth and reduced clarity are expected, not unusual. At 60 ft of maximum depth, Pepin Lake stratifies reliably through the summer — the hypolimnion stays cooler and clearer than the surface layer suggests. With 12,299 acres of surface and 54.9 miles of shoreline, Pepin Lake is a large water by Minnesota standards — recreational pressure is spread across a long shoreline.

Pepin Lake is on the Minnesota infested-waters list for zebra mussels — boaters should follow clean-drain-dry protocols when moving gear to or from the lake. Walleye are documented at Pepin Lake, one of 47 fish species on record for the lake. A documented public access point at Pepin Lake makes the lake usable for shore fishing, paddle craft, and trailered boats. Ice-out has been logged at Pepin Lake more than two dozen times, putting the median around Mar 29 — a useful baseline for tracking climate trends. Monitoring depth is thin here: the LakeGrade rubric is applied to a small number of sample years, and the grade will be revised as more data accumulates.

Source: EPA Water Quality Portal sampling records, Minnesota DNR LakeFinder, last sampled 2024-10-20. Grade methodology: LakeGrade methodology.

Swimming Safety

Avoid swimming, very poor water quality, potential algae toxins

Water Quality Grade: F, Very Poor

Very murky, less than 3 ft of visibility. Trophic State Index: 61.

MetricValueGrade
Water Clarity (Secchi Depth)3 ftF
PhosphorusNo data
Chlorophyll-a (Algae)No data
Trophic State Index (TSI)61Eutrophic

High nutrients, frequent algae, reduced clarity

Lake Details

CharacteristicValue
Maximum Depth60 ft
Average Depth21 ft
Surface Area12.3K acres
Shoreline Length54.9 mi
Littoral Zone66%
Public AccessYes

Fish Species

Click a species to see all Minnesota and Wisconsin lakes where it is found.

→ Best fishing times for Pepin Lake (14-day solunar calendar)

→ Is it safe to eat fish from Pepin Lake? (mercury & PFAS guide)

Pepin Lake fishing regulations (limits, seasons, special rules)

Invasive Species

Eurasian watermilfoilbighead carpsilver carpzebra mussel

Ice Season

Historical ice data from Minnesota DNR (164 observations).

Typical Ice-Out
Mar 29
Typical Ice-In
Dec 8

Estimated open water season: 254 days

EarliestLatest
Ice-Out2000-02-29 (2000)1843-05-20 (1843)
Ice-In1882-11-02 (1882)1890-12-30 (1890)

Most recent ice-out: 2026-03-29

Location

Loading map…

County Ranking

Ranked #1 of 1 lakes in Pepin County

Cleaner Lakes Within 30 Miles

Pepin Lake holds Grade F. 3 nearby lakes hold higher grades.

See full comparison →

Nearby Lakes in Pepin County

DNR Fisheries Survey Summary

25 surveys on file from MN DNR Fisheries. Most recent: 2023-06-02 (Standard Survey).

Top Species by Catch Rate

SpeciesAvg CPUEAvg Weight
SAR35.740.75 lb
TRP33.06
Freshwater Drum30.960.31 lb
Walleye22.731.52 lb
GIS22.430.22 lb
Smallmouth Bass20.191.01 lb

CPUE = catch per unit effort, averaged across surveys (excludes juvenile shoreline seining). Higher CPUE = more abundant in standardized sampling.

Length Distributions

Number of fish caught at each inch class in the most recent survey that recorded lengths. Red dashed line marks an approximate trophy threshold for that species.

SAR

1,589 fish · 122 in · 2023-06-02
3351680246810121416182022

TRP

181 fish · 13 in · 2023-06-02
124620123

Freshwater Drum

3,114 fish · 122 in · 2023-06-02
7303650246810121416182022

Walleye

1,101 fish · 227 in · 2023-06-02
2431220trophy 242468101214161820222426

From the 2023-06-02 survey

Anglers in 2021-2023 experienced "low" summer and fall water levels not seen since the late 1980s. These levels presented challenges to anglers whose experience on Pool 4 only took place during the last decade or so when "high water" has been the norm, but strong populations of multiple gamefish species particularly…

Source: MN DNR LakeFinder Fisheries Lake Survey

DNR Reports & Resources

Minnesota DNR LakeFinder publishes lake survey, fish stocking, water access, and aquatic plant data for Pepin Lake. 2 reports on file.

Data Sources

Water quality data from the EPA Water Quality Portal

Grading methodology based on Metropolitan Council standards

Lake details from Minnesota DNR LakeFinder

Ice data from Minnesota DNR Climate

Most recent sample: 2024-10-20

Monitoring stations: 5