Pepin Lake
Pepin County, MinnesotaLimited DataEutrophic
On the LakeGrade rubric Pepin Lake fails the cutoffs — a TSI of 61 and persistent algal pressure put it in the bottom tier. Clarity, phosphorus, and chlorophyll-a all rate similarly, so there is no obvious single lever to pull on watershed management.
At a TSI of 61, Pepin Lake reads as eutrophic — nutrient-rich enough that summer algal growth and reduced clarity are expected, not unusual. At 60 ft of maximum depth, Pepin Lake stratifies reliably through the summer — the hypolimnion stays cooler and clearer than the surface layer suggests. With 12,299 acres of surface and 54.9 miles of shoreline, Pepin Lake is a large water by Minnesota standards — recreational pressure is spread across a long shoreline.
Pepin Lake is on the Minnesota infested-waters list for zebra mussels — boaters should follow clean-drain-dry protocols when moving gear to or from the lake. Walleye are documented at Pepin Lake, one of 47 fish species on record for the lake. A documented public access point at Pepin Lake makes the lake usable for shore fishing, paddle craft, and trailered boats. Ice-out has been logged at Pepin Lake more than two dozen times, putting the median around Mar 29 — a useful baseline for tracking climate trends. Monitoring depth is thin here: the LakeGrade rubric is applied to a small number of sample years, and the grade will be revised as more data accumulates.
Source: EPA Water Quality Portal sampling records, Minnesota DNR LakeFinder, last sampled 2025-10-03. Grade methodology: LakeGrade methodology.
Watch Pepin Lake water quality
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Swimming Safety
Avoid swimming, very poor water quality, potential algae toxins
Water Quality Grade: F, Very Poor
Very murky, less than 3 ft of visibility. Trophic State Index: 61.
| Metric | Value | Grade |
|---|---|---|
| Water Clarity (Secchi Depth) | 3 ft | F |
| Phosphorus | No data | |
| Chlorophyll-a (Algae) | No data | |
| Trophic State Index (TSI) | 61 | Eutrophic |
High nutrients, frequent algae, reduced clarity
Lake Details
| Characteristic | Value |
|---|---|
| Maximum Depth | 60 ft |
| Average Depth | 21 ft |
| Surface Area | 12,299 acres |
| Shoreline Length | 54.9 mi |
| Littoral Zone | 66% |
| Public Access | Yes |
Fish Species
Click a species to see every graded lake where it is documented.
→ Best fishing times for Pepin Lake (14-day solunar calendar)
→ Is it safe to eat fish from Pepin Lake? (mercury & PFAS guide)
→ Pepin Lake fishing regulations (limits, seasons, special rules)
Invasive & Introduced Species
Red chips are ecologically harmful invasive species. Gray chips are stocked or introduced fish that aren't a current ecological concern.
Source: USGS Nonindigenous Aquatic Species (NAS) Database. Hover a chip to see scientific name, ecological context, status, and first-observed year.
Recreation & Access
Ice Season
Historical ice data from Minnesota DNR (164 observations).
Estimated open water season: 254 days
| Earliest | Latest | |
|---|---|---|
| Ice-Out | 2000-02-29 (2000) | 1843-05-20 (1843) |
| Ice-In | 1882-11-02 (1882) | 1890-12-30 (1890) |
Most recent ice-out: 2026-03-29
Location & Depth Map
Free interactive depth-contour map of Pepin Lake, reaching a maximum surveyed depth of 50 ft. Toggle Depth contours to overlay the bathymetric survey lines. Contour data from Minnesota DNR.
County Ranking
Ranked #1 of 1 lakes in Pepin County
Cleaner Lakes Within 30 Miles
Pepin Lake holds Grade F. One nearby lake has a higher grade.
Nearby Lakes in Pepin County
More Minnesota Lake Rankings
State Parks Near Pepin Lake
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Eutrophic Lakes in Minnesota
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DNR Fisheries Survey Summary
25 surveys on file from MN DNR Fisheries. Most recent: 2023-06-02 (Standard Survey).
Top Species by Catch Rate
| Species | Avg CPUE | Avg Weight |
|---|---|---|
| SAR | 35.74 | 0.75 lb |
| TRP | 33.06 | — |
| Freshwater Drum | 30.96 | 0.31 lb |
| Walleye | 22.73 | 1.52 lb |
| GIS | 22.43 | 0.22 lb |
| Smallmouth Bass | 20.19 | 1.01 lb |
CPUE = catch per unit effort, averaged across surveys (excludes juvenile shoreline seining). Higher CPUE = more abundant in standardized sampling.
Length Distributions
Number of fish caught at each inch class in the most recent survey that recorded lengths. Red dashed line marks an approximate trophy threshold for that species.
SAR
TRP
Freshwater Drum
Walleye
From the 2023-06-02 survey
Anglers in 2021-2023 experienced "low" summer and fall water levels not seen since the late 1980s. These levels presented challenges to anglers whose experience on Pool 4 only took place during the last decade or so when "high water" has been the norm, but strong populations of multiple gamefish species particularly…
DNR Reports & Resources
Minnesota DNR LakeFinder publishes lake survey, fish stocking, water access, and aquatic plant data for Pepin Lake. 2 reports on file.
- —Fisheries Lake Survey — PepinFisheries Lake Survey · MN DNR LakeFinder
- —Public Water Access Sites — PepinPublic Water Access Sites · MN DNR LakeFinder
EPA Impairment Status
Pepin Lake is officially listed as impaired under Clean Water Act §303(d) in the 2024 EPA reporting cycle (IR category 4A).
Causes of impairment
A Total Maximum Daily Load (TMDL) plan has been approved.
Source: EPA ATTAINS assessment unit MN25-0001-00 · Official waterbody report
Data Sources
Water quality data from the EPA Water Quality Portal
Impairment status from EPA ATTAINS 303(d) database
Grading methodology based on Metropolitan Council standards
Lake details from Minnesota DNR LakeFinder
Public boat-access points from the USGS National Boat Ramps inventory
Ice data from Minnesota DNR Climate
Most recent sample: 2025-10-03
Monitoring stations: 5
Where to stay near Pepin Lake
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