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LakeQuality

Of the 33,763 US lakes listed here, 5,873 carry enough nutrient and algae sampling to rank. The top 50 below draw from 8 states, led by Minnesota with 26 — deep, low-nutrient northern waters like Minnesota's Boundary Waters lakes and Wisconsin's spring-fed Northwoods lakes are over-represented at the top.

The cleanest lake on the index is Sunset Lake in Rutland County, VT — first on measured clarity and nutrients, with 36.1 feet of water clarity and phosphorus of 8.5 µg/L. Below that, the rest of the top 10 span 9.6 feet of Secchi between #1 and #10.

All readings come from EPA National Aquatic Resource Surveys and state monitoring programs (MN PCA, WI DNR). Lakes with fewer than three sampling visits are flagged as "limited data." Nutrient and algae readings describe ecology — they do not replace beach-specific E. coli advisories, which your state health department updates separately.

Top 9 Cleanest Lakes

RankLakeCountyStateClarityMax Depth
1Sunset LakeRutlandVT36.1 ft-
2Flaming Gorge ReservoirDaggettUT31.8 ft-
3Caspian LakeOrleansVT29.5 ft-
4Clearwater LakeCookMN29 ft65 ft
5Shadow LakeOrleansVT28.9 ft-
6Maidstone LakeEssexVT28.5 ft-
7Lake WilloughbyOrleansVT28.2 ft-
8Holland LakeDakotaMN27.9 ft55 ft
9Kerbs LakeOtter TailMN27.7 ft-
10Little Mcdonald LakeOtter TailMN26.5 ft109 ft
11Lake ElligoOrleansVT26.2 ft-
12Coles Run ReservoirAugustaVA25.8 ft-
13Forest LakeWashingtonVT25.6 ft-
14Bad Medicine LakeBeckerMN25 ft84 ft
15Serpent LakeCrow WingMN25 ft65 ft
16Big Cormorant LakeBeckerMN24.8 ft75 ft
17Seymour LakeOrleansVT24.6 ft-
18Echo LakeRutlandVT24.3 ft-
19Big Blue LakeKalkaskaMI24 ft-
20Lake BomoseenRutlandVT23.6 ft-
21Big Sand LakeHubbardMN23 ft135 ft
22Stony LakeCassMN23 ft50 ft
23Big Twin LakeKalkaskaMI23 ft-
24Echo LakeOrleansVT23 ft-
25Turtle LakeBeckerMN23 ft73 ft
26Belle Taine LakeHubbardMN22.8 ft56 ft
27Eagle LakeOtter TailMN22.6 ft46 ft
28Whitefish LakeFlatheadMT22 ft-
29West Sylvia LakeWrightMN22 ft97 ft
30Berlin PondWashingtonVT21.7 ft-
31Lake FairleeOrangeVT21.7 ft-
32Long LakeCassMN21.5 ft115 ft
33Lake MirrorWashingtonVT21.3 ft-
34Round LakeSawyerWI21.1 ft74 ft
35Bearskin LakeCookMN21 ft78 ft
36Six LakeOtter TailMN21 ft140 ft
37East Sylvia LakeWrightMN21 ft78 ft
38Harveys LakeCaledoniaVT21 ft-
39Geneva LakeWalworthWI21 ft135 ft
40Swenson LakeBeltramiMN20.7 ft76 ft
41Mayhew LakeCookMN20.6 ft84 ft
42Long LakeClearwaterMN20.5 ft80 ft
43Ten Mile LakeCassMN20.5 ft208 ft
44Newark PondCaledoniaVT20.4 ft-
45Beaver LakeCarrollAR20.3 ft-
46Gilmore LakeHubbardMN20.3 ft54 ft
47Little Sand LakeHubbardMN20 ft80 ft
48Long LakeBeltramiMN20 ft87 ft
49Big Fish LakeStearnsMN20 ft70 ft
50Ossawinnamakee LakeCrow WingMN20 ft63 ft

Where to stay near America's cleanest lakes

Planning a lake trip? Jump to live cabin, resort, and hotel availability on each top-ranked lake's page.

CSV

Top 500 Cleanest Lakes — Water Quality Dataset (2026)

The 500 top lakes across US lakes with nutrient and algae readings in one spreadsheet — water clarity, phosphorus, chlorophyll-a, trophic state, size, public access, and a link to each lake's page.

Frequently Asked Questions

Sunset Lake in Rutland County, VT, ranks first on measured clarity and nutrients. Its water clarity (Secchi depth) reads 36.1 feet, with phosphorus at 8.5 µg/L, from EPA and state agency sampling.

Each lake's nutrient and algae readings — total phosphorus, total nitrogen, chlorophyll-a, and turbidity — are shown beside the EPA National Lakes Assessment 2022 condition class for that lake's own ecoregion, so a reading is compared against the lakes it would naturally resemble. LakeQuality publishes no letter grade. Water clarity (Secchi depth) is measured and shown in feet on every lake page but is not scored: EPA assigns no condition class to Secchi depth, and dark water can come from algae, from natural dissolved colour, or from suspended clay. The readings cover nutrients and algae only. They are blind to mercury, PFAS and bacteria, so they are not a swimming clearance and not a fish-consumption clearance. A lake with limited sampling behind it cannot headline this table.

Not always. Water clarity correlates with low algae and low phosphorus — the same factors that drive harmful algal blooms — but Secchi does not measure E. coli, cyanotoxins, or a posted beach closure. Nutrient and algae readings are not a same-day clearance. Always check current swimming advisories before getting in.

Clean lakes share three traits: low nutrient inputs (especially phosphorus from septic, fertilizer, and farm runoff), good circulation and depth (deeper lakes resist warming and stratification), and protected forested shorelines that filter runoff. The cleanest lakes on this list tend to be deep, far from cropland, and surrounded by undeveloped land.