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LakeQuality

Cleanest Lakes in Minnesota

East Fox Lake ranks #1 for water quality in Minnesota with a grade of A. Below: the top 25 cleanest lakes in Minnesota by combined Secchi clarity, phosphorus, and chlorophyll-a from 2026 EPA + DNR sampling.

Filtered to remove lakes with limited data (<3 sampling years). Sorted by overall water quality score.

RankLakeCountyGradeClarityPhosphorusChlorophyll-aArea
1East Fox LakeCrow WingA16.1 ft10 µg/L240.88 acres
2Deep Portage LakeCassA15.4 ft10 µg/L129.02 acres
3Little Wabana LakeItascaA23.8 ft6.5 µg/L115.73 acres
4Clearwater LakeCookA30 ft4 µg/L461.73 acres
5Lower Hay LakeCrow WingA19 ft13 µg/L700.21 acres
6Latoka LakeDouglasA19 ft11 µg/L766.63 acres
7Bad Medicine LakeBeckerA25 ft6 µg/L803.03 acres
8Big Sugar Bush LakeBeckerA17 ft10 µg/L521.51 acres
9Pelican LakeOtter TailA16.1 ft15 µg/L4.0K acres
10Fullers Lake: East BasinBeltramiA49.2 ft9.5 µg/L-
11Birch LakeWrightA15 ft17 µg/L99.82 acres
12Birch LakeCookA18 ft8 µg/L236.31 acres
13Round LakeCookA16.5 ft8.5 µg/L154.48 acres
14Round LakeBeltramiA59.1 ft7 µg/L181.06 acres
15Pike LakeCookA17.8 ft6 µg/L814.43 acres
16Whitefish LakeCrow WingA15.1 ft14 µg/L7.7K acres
17Long LakeClearwaterA20 ft7 µg/L158.86 acres
18Long LakeCassA21.8 ft9 µg/L1.0K acres
19Long LakeBeltramiA20 ft7 µg/L411.95 acres
20Long LakeBeckerA20 ft8 µg/L414.51 acres
21Long LakeBeltramiA45.9 ft8 µg/L-
22Long LakeItascaA16.7 ft8 µg/L155.28 acres
23Long LakeItascaA16.9 ft10 µg/L134.49 acres
24Dead LakeHubbardA16 ft10 µg/L130.64 acres
25Unnamed LakeOtter TailA15.1 ft9 µg/L1.4K acres

Frequently Asked Questions

What is the cleanest lake in Minnesota?

East Fox Lake has the highest water quality score in our 2026 Minnesota dataset (grade A), based on combined Secchi clarity, phosphorus, and chlorophyll-a measurements. Cleanliness here means low nutrient load, deep water clarity, and minimal algae — measured directly from EPA and state DNR samples.

What is the most polluted lake in Minnesota?

Among monitored Minnesota lakes, East Arctic Lake ranks among the most polluted by combined phosphorus and chlorophyll-a load. See our full ranking on the most-polluted-lakes trend page for state-by-state details.

Where in Minnesota has the cleanest water?

Minnesota's clearest waters are concentrated in the deeper, lower-nutrient lakes of the state's northeast — typically older glacial lakes with rocky basins and forested watersheds. The top 25 above shows the highest-scoring lakes statewide; counties like Cook, Lake, and Itasca (MN) or Vilas, Oneida, and Iron (WI) consistently produce A-grade waters.

Are these lakes safe to swim in?

A and B grade lakes are typically safe for swimming under normal conditions. Chlorophyll-a below 10 µg/L means low risk of harmful algal blooms. Always check posted advisories before swimming — water quality changes seasonally, especially in late summer when blue-green algae bloom risk peaks.

How are these grades calculated?

Each lake is scored on three signals: Secchi depth (water clarity in feet), total phosphorus (nutrient load in µg/L), and chlorophyll-a (algae concentration in µg/L). Each gets a 0–100 sub-score relative to Minnesota state norms. The three sub-scores average into the overall score, which maps to an A–F letter grade. Methodology details live on our methodology page.

What are the top 5 cleanest lakes in the US?

There is no single national ranking of cleanest lakes — each state agency uses different metrics. Crater Lake (Oregon) is widely cited as the clearest US lake, with Secchi depths over 30 m. Lake Tahoe and Lake Superior are also top-tier nationally. Within Minnesota, the lakes ranked above are the top 25 by our standardized 2026 grading.

How we rank cleanest lakes

Cleanliness here means three things working together:

  • Secchi clarity — how deep you can see into the water (in feet). Greater depth = clearer water = lower suspended sediment and algae.
  • Total phosphorus — the nutrient that fuels algae. Lower phosphorus levels mean less algae growth potential.
  • Chlorophyll-a — the green pigment in algae. Direct measurement of how much algae is currently in the water.

Each signal is normalized against Minnesota state norms and combined into a single 0–100 score. The lakes above are sorted by that combined score.Full methodology →