Skip to main content
LakeQuality

Cleanest Lakes in Wisconsin

Geneva Lake ranks #1 for water quality in Wisconsin with a grade of A. Below: the top 25 cleanest lakes in Wisconsin by combined Secchi clarity, phosphorus, and chlorophyll-a from 2026 EPA + DNR sampling.

Filtered to remove lakes with limited data (<3 sampling years). Sorted by overall water quality score.

RankLakeCountyGradeClarityPhosphorusChlorophyll-aArea
1Geneva LakeWalworthA19 ft13 µg/L5.4K acres
2Lac Courte Oreilles LakeSawyerA38.7 ft16 µg/L1.4 µg/L5.1K acres
3Sunset LakePortageA41 ft12 µg/L63 acres
4Sunset LakeVilasA56.5 ft11 µg/L207 acres
5Grindstone LakeSawyerA57.7 ft14.4 µg/L1.7 µg/L3.2K acres
6Middle Sugarbush LakeVilasA50 ft13 µg/L254 acres
7Irving LakeVilasA36.1 ft18.6 µg/L419 acres
8Windigo LakeSawyerA36.1 ft15.6 µg/L503 acres
9Towanda LakeVilasA34.5 ft12.6 µg/L139 acres
10Parker LakeAdamsA55.8 ft14.8 µg/L57 acres
11West Bay LakeVilasA42.7 ft16.4 µg/L417 acres
12Long LakeWashburnA29.5 ft17.5 µg/L-
13Long LakeWausharaA45.9 ft11.6 µg/L254 acres
14Long LakeWaupacaA44.3 ft12.4 µg/L112 acres
15Long LakeBurnettA68.9 ft11.3 µg/L222 acres
16Long LakeLincolnA47.7 ft12.4 µg/L119 acres
17Long LakeChippewaA32.8 ft12.4 µg/L936 acres
18Long LakeFond du LacA32.8 ft19.3 µg/L423 acres
19Long LakeBayfieldA52.5 ft13.7 µg/L280 acres
20Long LakeOcontoA47.6 ft10.2 µg/L-
21Chain LakeOcontoA44.3 ft9.5 µg/L76 acres
22Upper Eau Claire LakeBayfieldA61.5 ft11.5 µg/L1.0K acres
23Spring LakeVilasA27.9 ft16.3 µg/L236 acres
24Spring LakeManitowocA26.2 ft19.6 µg/L9 acres
25Black Hawk LakeIowaA17.2 ft19.9 µg/L212 acres

Frequently Asked Questions

What is the cleanest lake in Wisconsin?

Geneva Lake has the highest water quality score in our 2026 Wisconsin dataset (grade A), based on combined Secchi clarity, phosphorus, and chlorophyll-a measurements. Cleanliness here means low nutrient load, deep water clarity, and minimal algae — measured directly from EPA and state DNR samples.

What is the most polluted lake in Wisconsin?

Among monitored Wisconsin lakes, Tilleda Off Bridge Lake ranks among the most polluted by combined phosphorus and chlorophyll-a load. See our full ranking on the most-polluted-lakes trend page for state-by-state details.

Where in Wisconsin has the cleanest water?

Wisconsin's clearest waters are concentrated in the deeper, lower-nutrient lakes of the state's northeast — typically older glacial lakes with rocky basins and forested watersheds. The top 25 above shows the highest-scoring lakes statewide; counties like Cook, Lake, and Itasca (MN) or Vilas, Oneida, and Iron (WI) consistently produce A-grade waters.

Are these lakes safe to swim in?

A and B grade lakes are typically safe for swimming under normal conditions. Chlorophyll-a below 10 µg/L means low risk of harmful algal blooms. Always check posted advisories before swimming — water quality changes seasonally, especially in late summer when blue-green algae bloom risk peaks.

How are these grades calculated?

Each lake is scored on three signals: Secchi depth (water clarity in feet), total phosphorus (nutrient load in µg/L), and chlorophyll-a (algae concentration in µg/L). Each gets a 0–100 sub-score relative to Wisconsin state norms. The three sub-scores average into the overall score, which maps to an A–F letter grade. Methodology details live on our methodology page.

What are the top 5 cleanest lakes in the US?

There is no single national ranking of cleanest lakes — each state agency uses different metrics. Crater Lake (Oregon) is widely cited as the clearest US lake, with Secchi depths over 30 m. Lake Tahoe and Lake Superior are also top-tier nationally. Within Wisconsin, the lakes ranked above are the top 25 by our standardized 2026 grading.

How we rank cleanest lakes

Cleanliness here means three things working together:

  • Secchi clarity — how deep you can see into the water (in feet). Greater depth = clearer water = lower suspended sediment and algae.
  • Total phosphorus — the nutrient that fuels algae. Lower phosphorus levels mean less algae growth potential.
  • Chlorophyll-a — the green pigment in algae. Direct measurement of how much algae is currently in the water.

Each signal is normalized against Wisconsin state norms and combined into a single 0–100 score. The lakes above are sorted by that combined score.Full methodology →