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LakeQuality

The single cleanest lake in Montana is Tally Lake, ranked first on its measured clarity and nutrients in the 2026 sampling record. Cleanliness here is measured by Secchi depth (clarity), total phosphorus, and chlorophyll-a — all sourced from EPA Water Quality Portal and state agency sampling, shown as reported. The full top 22 ranked list appears below.

Ranking the cleanest Montana lakes means picking the basins with the lowest nutrient and algae readings, then the clearer water among lakes that tie. Tally Lake leads the list, with Whitefish Lake close behind.

The top of the cleanest-lakes list is dominated by deep, glacial, cold-water basins — the same basins that carry the lowest nutrient readings overall. The pattern is not coincidence: depth and watershed land-use are the dominant inputs to water-clarity and nutrient-loading both.

RankLakeCountyClarityPhosphorusChlorophyll-aArea
1Tally LakeFlathead15.2 ft4.7 µg/L0.8 µg/L-
2Whitefish LakeFlathead22 ft2.8 µg/L0.9 µg/L-
3Swan Lake North EndLake—3.1 µg/L1.1 µg/L-
4Little Bitterroot Lake CenterFlathead—4 µg/L1 µg/L-
5Inez LakeMissoula—7.1 µg/L1.8 µg/L-
6Alva LakeMissoula—4.7 µg/L0.7 µg/L-
7Cooney ReservoirCarbon12.5 ft20 µg/L2.6 µg/L1,078 acres
8East Bay LakeLake—3 µg/L—-
9Big Arm Bay LakeLake—1.5 µg/L—-
10Dickey LakeLincoln—11.3 µg/L2.2 µg/L-
11Mcgilvray LakeFlathead—5.9 µg/L1.7 µg/L-
12Hanson-Doyle LakeFlathead—7.3 µg/L2.3 µg/L-
13Fish LakeLincoln—8.1 µg/L2.3 µg/L-
14Bailey LakeFlathead—6.9 µg/L2 µg/L-
15Big Sky LakeMissoula—10 µg/L2.1 µg/L-
16Loon LakeLake—6.7 µg/L2.2 µg/L-
17Mary Ronan Lake WestLake—33.6 µg/L4.7 µg/L-
18Foys LakeFlathead—15.8 µg/L4.1 µg/L-
19Rogers LakeFlathead—11.6 µg/L2.6 µg/L-
20Jette LakeLake—16.6 µg/L4.7 µg/L-
21Mary Ronan Lake EastLake—15.8 µg/L3.5 µg/L-
22Lake Helena OutletLewis and Clark—115.5 µg/L—-

Get updates when Montana's cleanest-lake list changes

New nutrient and algae samples can move a lake up or down this ranking. Unsubscribe anytime.

Clearest lakes in Montana by water clarity

“Clearest” ranks by Secchi depth — how far you can see into the water — which can differ from the combined cleanliness score above. The clearest water in Montana is Big Therriault Lake at 37.3 ft of Secchi visibility.

  1. 1. Big Therriault Lake — 37.3 ft, Lincoln County
  2. 2. Ashley Lake — 33.1 ft, Flathead County
  3. 3. Holland Lake — 30.5 ft, Missoula County
  4. 4. Clearwater Lake Deep — 28.6 ft, Missoula County
  5. 5. Lindbergh Lake — 26.5 ft, Missoula County
See the full clearest-lakes ranking for Montana →

Frequently Asked Questions

What is the cleanest lake in Montana?

Tally Lake ranks first on measured clarity and nutrients in the 2026 Montana sampling record. Each lake's nutrient and algae readings — total phosphorus, total nitrogen, chlorophyll-a, and turbidity — are shown beside the EPA National Lakes Assessment 2022 condition class for that lake's own ecoregion, so a reading is compared against the lakes it would naturally resemble. LakeQuality publishes no letter grade. Cleanliness here means a low nutrient load and little algae, measured directly from EPA and state DNR samples; where two lakes tie on nutrients and algae, the deeper Secchi reading ranks first.

Where in Montana has the cleanest water?

Montana's clearest waters are concentrated in deeper, lower-nutrient glacial basins with forested or low-agriculture watersheds. Among the current top-ranked lakes above, counties like Flathead, Lake, and Missoula produce the highest-scoring lakes.

What is the clearest lake in Montana?

Big Therriault Lake is the clearest lake in Montana by water clarity, with a Secchi depth of 37.3 feet — the deepest transparency in our 2026 dataset. "Clearest" ranks by Secchi depth (how far you can see into the water) specifically, while "cleanest" combines clarity with phosphorus and chlorophyll-a. See our full clearest-lakes ranking for Montana for the top 25 by Secchi clarity.

Are these lakes safe to swim in?

Not on these readings alone. Clarity and nutrient readings are not a swimming clearance: they do not measure E. coli, cyanotoxins, or a posted beach closure, and a lake with low chlorophyll-a can still bloom. Always check current posted advisories before swimming: water quality changes seasonally, especially in late summer when blue-green algae bloom risk peaks.

How is this ranking calculated?

Lakes are ranked on phosphorus, chlorophyll-a and clarity as measured by EPA and state agency sampling, read against EPA National Lakes Assessment 2022 condition classes for that lake’s ecoregion, not a Montana-only 0–100 average. Water clarity is shown beside the nutrient readings. Lakes with limited sampling do not headline the table.

What are the top 5 cleanest lakes in the US?

There is no single national ranking of cleanest lakes — each state agency uses different metrics. Crater Lake (Oregon) is widely cited as the clearest US lake, with Secchi depths over 30 m. Lake Tahoe and Lake Superior are also top-tier nationally. Within Montana, the 22 lakes ranked above have the lowest nutrient and algae readings in our 2026 dataset.

How we rank cleanest lakes

Cleanliness here means three things working together:

  • Secchi clarity — how deep you can see into the water (in feet). Greater depth = clearer water = lower suspended sediment and algae.
  • Total phosphorus — the nutrient that fuels algae. Lower phosphorus levels mean less algae growth potential.
  • Chlorophyll-a — the green pigment in algae. Direct measurement of how much algae is currently in the water.

Each signal is normalized against Montana state norms and combined into a single 0–100 score. The lakes above are sorted by that combined score.Full methodology →

Where to stay near Montana's cleanest lakes

Compare cabins, resorts, and rentals around Tally Lake and the other lakes in this ranking, with live availability and prices for your trip. Each pin on the map is one of the ranked lakes above.

Top-rated places to stay near Tally Lake

Prices for Oct 30–Nov 1, 4 adults. Change dates on the map below.

Availability and prices from Stay22 partners (Booking.com, Vrbo, Expedia). We may earn a commission from bookings, at no extra cost to you.

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Source: EPA National Aquatic Resource Surveys, 2026.